Cytosim  PI
Cytoskeleton Simulator
List of objects

Modules

 Couple and Derived Activities
 A Couple contains two Hand, and can thus crosslink two Fibers.
 
 Fiber and Derived Activities
 The default Fiber is of fixed length, but derived class can change length.
 
 Hand and Derived Activities
 A Hand can bind to a Fiber, and derived class can do more things.
 
 Single and Derived Activities
 A Single contains one Hand, and can thus bind to one Fiber.
 
 Space and Geometry
 A Space define a confined region.
 

Detailed Description

@ The command set simul will define the global paramters. The simul is automatically created, and you cannot use 'new simul'.

Objects Base Class Parameters
simul Simul Parameters of Simul

Other classes below can be used with set and new:

Class Name Base Class Parameters Specialization
space Space Parameters of Space Space and Geometry
field FieldBase Parameters of Field -
fiber Fiber Parameters of Fiber Fiber and Derived Activities
bead Bead Parameters of Solid and Bead -
solid Solid Parameters of Solid and Bead -
sphere Sphere Parameters of Sphere -

Activities that can bind to fiber, make crosslinks, etc:

Class Name Base Class Parameters Specialization
hand @ Hand Parameters of Hand Hand and Derived Activities
single Single Parameters of Single Single and Derived Activities
couple Couple Parameters of Couple Couple and Derived Activities

@ Class hand and derived classes can only be used with command set, because they only exist as part of single or couple.

Organizers Base Class Parameters
aster Aster Parameters of Aster
bundle Bundle Parameters of Bundle
nucleus Nucleus Parameters of Nucleus
fake Fake Parameters of Fake

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