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Cytosim
PI
Cytoskeleton Simulator
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Modules | |
| Couple and Derived Activities | |
| A Couple contains two Hand, and can thus crosslink two Fibers. | |
| Fiber and Derived Activities | |
| The default Fiber is of fixed length, but derived class can change length. | |
| Hand and Derived Activities | |
| A Hand can bind to a Fiber, and derived class can do more things. | |
| Single and Derived Activities | |
| A Single contains one Hand, and can thus bind to one Fiber. | |
| Space and Geometry | |
| A Space define a confined region. | |
@ The command set simul will define the global paramters. The simul is automatically created, and you cannot use 'new simul'.
| Objects | Base Class | Parameters |
|---|---|---|
simul | Simul | Parameters of Simul |
Other classes below can be used with set and new:
| Class Name | Base Class | Parameters | Specialization |
|---|---|---|---|
space | Space | Parameters of Space | Space and Geometry |
field | FieldBase | Parameters of Field | - |
fiber | Fiber | Parameters of Fiber | Fiber and Derived Activities |
bead | Bead | Parameters of Solid and Bead | - |
solid | Solid | Parameters of Solid and Bead | - |
sphere | Sphere | Parameters of Sphere | - |
Activities that can bind to fiber, make crosslinks, etc:
| Class Name | Base Class | Parameters | Specialization |
|---|---|---|---|
hand @ | Hand | Parameters of Hand | Hand and Derived Activities |
single | Single | Parameters of Single | Single and Derived Activities |
couple | Couple | Parameters of Couple | Couple and Derived Activities |
@ Class hand and derived classes can only be used with command set, because they only exist as part of single or couple.
| Organizers | Base Class | Parameters |
|---|---|---|
aster | Aster | Parameters of Aster |
bundle | Bundle | Parameters of Bundle |
nucleus | Nucleus | Parameters of Nucleus |
fake | Fake | Parameters of Fake |
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